species:   Clros
pid:       PID1837
parent:    cro-mir-3
paralog:   
locus:     CADEHS020000005.2:590453-590538
matures:   ['UUAGCCUCGAGACUUUGCA', 'CAAAGUCUCGAGGCUGAG']
srr:       ERR5950930
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram CADEHS020000005.2:590453-590538

42 out of bounds
1521 alignments
1336 proper strand
988 stranded perfect matches

*******************                                              ******************** 
UUAGCCUCGAGACUUUGCAGGAUAUAUUCUUUUUCUUUUUCGCCGUAAAGAAAACAAAGCUAUCCGGCAAAGUCUCGAGGCUGAGC
((((((((((((((((((.(((((..((..((((((((........))))))))..))..))))).))))))))))))))))))..
UUAGCCUCGAGACUUUGCA------------------------------------------------------------------- l=19 a=429 c
-------------------------------------------------------------------CAAAGUCUCGAGGCUGAG- l=18 a=0 c*
UUAGCCUCGAGACUUUGCA------------------------------------------------------------------- l=19 a=429 ma
-------------------------------------------------------------------CAAAGUCUCGAGGCUGAG- l=18 a=0 ma*

UUAGCCUCGAGACUU----------------------------------------------------------------------- l=15 a=7 
UUAGCCUCGAGACUUUGg-------------------------------------------------------------------- l=18 a=1 
UUAGCCUCGAGACUUUGC-------------------------------------------------------------------- l=18 a=68 
UUAGCCUCGAGACUUUGCA------------------------------------------------------------------- l=19 a=429 (c,ma)
UUAGCCUCGAGACUUUGCc------------------------------------------------------------------- l=19 a=20 
UUAGCCUCGAGACUUcGCA------------------------------------------------------------------- l=19 a=1 
UUAGCCUCGAGACUUUGaA------------------------------------------------------------------- l=19 a=1 
UUAGCCUCGAGACUUUuCA------------------------------------------------------------------- l=19 a=1 
UUAGCCUCaAGACUUUGCA------------------------------------------------------------------- l=19 a=1 
UUAGCCUCGAGACgUUGCA------------------------------------------------------------------- l=19 a=1 
UUAGCCUCGAGACUUUGCAG------------------------------------------------------------------ l=20 a=373 
UUAGCCUCGAGACUUUGCAa------------------------------------------------------------------ l=20 a=22 
UUAGCCcCGAGACUUUGCAG------------------------------------------------------------------ l=20 a=1 
UUAGCCUCGAGACUUUGCAc------------------------------------------------------------------ l=20 a=2 
UUAGCCUCGAGACaUUGCAG------------------------------------------------------------------ l=20 a=1 
UUAGCCUCGAGACUUUGCAGa----------------------------------------------------------------- l=21 a=157 
UUAGCCUCGAGACUUUGCAGG----------------------------------------------------------------- l=21 a=10 
cUAGCCUCGAGACUUUGCAGG----------------------------------------------------------------- l=21 a=1 
UUAGCCUCGAGACUUUGCAGc----------------------------------------------------------------- l=21 a=35 
UUAGCCUCGAGACUUUGCAGu----------------------------------------------------------------- l=21 a=1 
UUAGCCUCGAGACUUUGCAGaA---------------------------------------------------------------- l=22 a=84 
UUAGCCUCGAGACUUUGCAGGA---------------------------------------------------------------- l=22 a=4 
UUAGCCUCGAGACUUUGCAGGAa--------------------------------------------------------------- l=23 a=6 
UUAGCCUCGAGACUUUGCAGGAc--------------------------------------------------------------- l=23 a=2 
-UAGCCUCGAGACUUUGCA------------------------------------------------------------------- l=18 a=1 
-UAGCCUCGAGACUUUGCAG------------------------------------------------------------------ l=19 a=3 
-UAGCCUCGAGACUUUGCAGa----------------------------------------------------------------- l=20 a=5 
------UCGAGACUUUGCAGGAUAUAU----------------------------------------------------------- l=21 a=1 
------UCGAGACUUUGCAGGAUAUAUUCU-------------------------------------------------------- l=24 a=1 
------UCGAGACUUUGCAGGAUAUgUUCUUUUUCUUUUUCGC------------------------------------------- l=37 a=1 
----------------------UAUAUUCUUUUUCUUUUUCGCCGUAAAGAAAACAAAGCUAUC---------------------- l=42 a=1 
--------------------------------------------------------------UCCGGCAAAGUCUCGAGG------ l=18 a=1 
--------------------------------------------------------------UCCGGCAAAGUCUCGAGGC----- l=19 a=4 
--------------------------------------------------------------UCCGGCAAAcUCUCGAGGCU---- l=20 a=1 
--------------------------------------------------------------UCCGGCAAAGUCUCGAGGCU---- l=20 a=2 
----------------------------------------------------------------CGGCAAAGUCUCGAGGCUG--- l=19 a=4 
----------------------------------------------------------------CGGCAAAGUCUCGAGGCUGA-- l=20 a=5 
----------------------------------------------------------------CGGCAAAGUCUCGAGGCUGAc- l=21 a=1 
----------------------------------------------------------------CGGCAAAGUCUCGAGGCUGAa- l=21 a=1 
----------------------------------------------------------------CGGCAAAGUCUCGAGGCUGAGC l=22 a=69 
----------------------------------------------------------------CGGCAAAGUCUCGAGGCUGAaC l=22 a=1 
-----------------------------------------------------------------GGCAAAGUCUCGAGGCUGAGC l=21 a=4 
------------------------------------------------------------------GCAAAGUCUCGAGGCUGAGC l=20 a=1 

mb-01111
ax-1011001
ku-11
ss-101011111110
fn-111
